mp4 files that played perfectly by themselves, once MPEG Streamclip was finished with it, the audio did not sync with the video. Although with that movie I did end with a bunch of. This method did not work for Tropic Thunder. The distortion at the beginning of each chapter is still there, but I can live with that unless I find out what Im doing wrong. But then what I did was used the program MPEG Streamclip and it put all those individual files into one. I dont know if that has anything to do with it.
I noticed at the beginning of each chapter for just a second the picture is all distorted.
I used handbrake and did one chapter at a time, ending up with 24 individual. Just an update to my issue, I kind of had success with one movie, The Fall.